Local sequence-alignment similarity score
SmithWatermanSimilarity[u, v]
SmithWatermanSimilarity[ "xxxxABCx", "yABCyyyy"]
→ 3.SmithWatermanSimilarity[{0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0}, {1, 1, 1, 1}]
→ 2.SmithWatermanSimilarity[BioSequence["DNA", "AGGTCCCAAAA"], BioSequence["DNA", "AGGTTCCAAT"]]
→ 27.- GapPenalty — default 0
- IgnoreCase — default False
- SimilarityRules — default Automatic